HC Lee

Conference presentations/chaired session at:

2002

- 2002 International Workshop on Bioinformatics
  Feb 18-20, 2002, Taipei

  Gave talk: Models for evolution of whole genomes
  Chaired a session

- Annual Meeting of ROC Physical Society 2002
  Feb, 2002, Taichung

  Chaired plenary session
  Gave talk: Models for evolution of whole genomes

- NCTS informal talk on Mathematics \& Biology, 2003 Mar 12
  Models for evolution of whole genomes

- Nanjing University Centennial Interdisciplinary Condensed Matter Workshop
  May 22-24, 2002, Nanjing

  International conference with 200 attendances and 50 speakers

  Gave talk: Lessons on protein structure from lattice models

- 8th Annual Meeting of ROC Biophysical Society
  May 22-25, 2002, Taipei

  Chaired a session

- StatPhys-Taiwan-2002
  May 26 to June 1, Taipei and Nantou

  Annual international conference on statistics mechanics and related 
  topics

  Gave talk: Model for growth and evolution of whole genomes

- Workshop on Bioinformatics, Thursday May 30, CS, Zhong-Zheng
  U. (Yuh-Jye Lee)
  "The Human Genome Project and its aftermath - An introduction"

- Seminar Thursday June 6 Physics, Zhong-Zheng U. (Dian-Jiun Han)
  "Model for growth and evolution of whole genomes"

- International Symposium on Frontiers of Science
   June 17 -19, 2002, Beijing

  Big conference In Celebration of the 80th Birthday of Chen Ning Yang; 
  attendance about 500; lecturers include 14 Nobel laureates

  Gave talk: Models for the growth of whole genomes

- Second Eastern Formosa Summer School on Biophysics
  July 1-7, 2002, Donghua University, Hualien
  Four Lectures on Computational Biology:
  * Biosequence alignment
  * The Hidden Markov Model
  * Evolution and Phylogeny
  * Microarray analysis
 
- Third Cross-Strait Workshop on Biology Inspired Problems
  July 8-15, 2002, Hualien (see above) 

  Gave talk: Model for growth and evolution of whole genomes

- 4th UNESCO INTERNATIONAL CONFERENCE ON THEORETICAL PHYSICS
  22-27 July 2002, Paris

  First three UNESCO Conf Theo Phys held in 1956, 1958, 1968, respectively. 
  This one had ~1,200 attendances including all the leading figures in 
  theoretical physics

  Gave poster presentation: Model for growth and evolution of whole genomes

- Seminars on "Minimal model for genome growth and evoution"

  * Monday, 2002 October 21
    Département d'Informatique et de R.O., Université de Montréal,  
    (CRM Bldg) (Francois Major)
  * Tuesday 2002 Oct 22
    Dept. Phys, McGill,  (Harry Lam)
  * Wednesday, 2002 Nov 27 
    CTB, Beijing University (Lai Luhua)
  * Tuesday, 2002 December 3
    ITP/AS Beijing (Ouyang)

- The Bioinformatics and BioGrid 2002 Workshop on BioGrid Technology 
  Friday, Nov. 8, 2002, NCHC, Tainan
  "Protein Bio-Computing: MD studies of protein structure and 
  function by Massively distributed computing"

- Colloquium, Bioinformatics education program, National Yang-Ming 
  University (Tsou Ann-Ping) Wednesday, 2002 Nov. 13
  "DNA uptake signal sequences in some human pathogens"

- CCAST Workshop on Protein Structure
  November 18-22, Beijing

  Attended mostly by scientists from Chinese engaged in
  cross-disciplinary research in structural biology

  Gave talk: Lessons from lattice model on protein structure and massively 
              distributed computational studies on protein structure

- First Winter School on Modern Biophysics, NTU (Hwang Pauchy)
  December 16-20, 2002
  Tuesday December 17, Two lectures: 
  1. "Looking at Whole Genomes: Frequency of Occurrence of Oligonucleotides" 
  2. "Genomes Are Large Systems with Small-System Statistics: Growth of 
     Genomes by Duplication" 

============================================================================
2003

Conference/Workshop Presentations (Talk by HC Lee unless otherwise stated)

- "Growth of microbial genomes by short segmental duplications
  and the RNA world"
  2003 Taipei Winter Workshop on Biological Evolution and Related
  Problems, 2003 February 10-11, Inst. Physics, Academia Sinica, Taipei

- "Growth of Bacterial Genomes by Self-Copying" (Poster)
  LC Hsieh and HC Lee
  American Biophysical Society Annual Meeting
  2003 March 1-5, San Antonio, Texas 

- "Evidence for growth of Genomes by Segmental Duplication"
  Comparative Genomics Workshop 
  2003 March 28, Taichung Health and Management University
  
- "Genomes are Large Systems with Small-System Statistics:
  Genome Growth by Segmental Duplication"
  Systems Biology Symposium
  2003 April 15-17, Inst. Biochemistry/AS, Taipei

- "Why do different bacterial species share common DNA Uptake Signal 
  Sequences."
  Bakkali, M., Chen, T.-Y., Lee, H. C.  and Redfield, R. J. 
  Annual Joint Meeting of the Society for the Study of Evolution, 
  Society of Systematic Biologists, and American Society of Naturalists: 
  Evolution 2003.  2003 June 19-24, Chico, California, USA.
   
- "Evolution of DNA Uptake Signal Sequences in bacterial genomes"
  Bakkali, M., Chen, T. -Y., Lee, H. C. and Redfield, R. J.
  Gordon Research Conferences 2003 (Applied and Environmental
  Microbiology). 2003 July 27-August 1, Connecticut, USA. 
 
- "Search for Evolution-Related-Oligonucleotides and ConservativeWords 
  in rRNA Sequences"  (Poster)
  L.F. Luo, L.C. Hsieh, F.M. Ji, M.W. Jia and H.C. Lee
  IEEE Computer Society Bioinformatics Conference (CSB'03) 
  2003 August 11 - 14, Stanford, California 
  IEEE Proc. Comp. Sys. Bioinformatics, (2003) 468-469 

- "Evidence for Growth of Microbial Genomes by Short Segmental 
  Duplications" (Poster) 
  L.C. Hsieh, L.F. Luo and H.C. Lee 
  IEEE Computer Society Bioinformatics Conference (CSB'03) 
  2003 August 11 - 14, Stanford, California 
  IEEE Proc. Comp. Sys. Bioinformatics, (2003) 474-475

- "DNA Uptake Signal Sequences: Genesis and evolution" (Talk by Bakkali)
  Bakkali, M., Chen, T. -Y., Lee, H. C. and Redfield, R. J.
  American Society for Microbiology, Northwest Branch Meeting. 
  2003 August 7-10,  Vancouver, Canada. 

- "Quasireplicas and universal lengths of microbial genomes"
  * First Cross-Strait Workshop on Statistical Physics, 
  2003 August 27-31, Yangzhou, China

- "Why are DNA Uptake Signal Sequences over-represented in the genomes
  of most Pasteurellaceae bacterial species?" (Talk by Bakkali) 
  Bakkali, M., Chen, T.-Y.,  Lee, H. C. and Redfield, R. J.
  2003 Pacific Northwest Ecology and Evolution Retreat. 
  October 31-November 2, 2003, Port Moody, Canada.

- "Massively Distributed Molecular Dynamics Simulation of Proteins 
   and Parallel Tempering"
   Workshop on Theoretical approaches to self-assembly in protein 
   and RNA folding
   2003 December 15-19, National Center for Theoretical Science, Shinchu
   
- "Shannon information in Complete Genomes" 
  CH Chang, LC Hsieh, TY Chen, HC Lee
  *Annual Congress of Mathematical Society of ROC
   2003 December 19-21, NCU, Chungli

Colloquia/Semina Talks

- "Genomes are large systems with small-system statistics: 
  Model for growth and evolution of genomes"
  NTHU Colloquium Wednesday Feb 19 
  
- "Model for the Growth of Universal Genome"
  2003 Thursday March 20, Inst. Phys. AS, Taipei
  
- "Quasireplicas and universal lengths of microbial genomes"
  * Center for Theoretical Biology, Beijing University
    2003 August 18
  * Institute for Theoretcial Physics, Chinese Academy of Science
    Beijing, 2003 August 22

- "Universality in large-scale structure of complete genomes"
  * National Center for Theoretical Sciences, 2003 September 25
  * National Central University, 2003 September 30

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2004

Conference/Workshop Presentations

- September 1-4, Genoa, Italy, Conference on Computational Physics 2004
"Shannon Information and Self-Similarity in Whole Genomes"

- August 17-19, Stanford,USA, IEEE Confernece on Computational Biology (CSB2004)
"Shannon information in Complete Genomes"

- July 3, Hangzhou, China, Mini-workshop on COmputational Physics
"Protein Studies by Massively Distributed Computing" (By Lo Ji-Lin)

- June 28 - July 1, Shanghai, China, Fourth Joint Meeting of Chinese Physicists Worldwide
"Looking at Whole Genomes - Information, growth and evolution"

- June 24-28, Xiamen, China, Fourth Corss-Strait Biology Inspired Theoretical Problems
  "Looking at Whole Genomes - Information, growth and evolution"
  "Universality in complete genomes" (By Hsieh Li-Ching)
  "DNA Uptake Signal Sequences in Human Pathogens" (By Chen Da-Yuan)
  "Protein Studies by Massively Distributed Computing" (By Lo Ji-Lin)

- June 20-21, Taipei, Systems Biology Workshop
  "Looking at Whole Genomes - Information, growth and evolution"

- May 26-28, Taipei, AS, Ninth Symposium of Recent Advances in Biophysics
  "Universality in Complete Genomes" (By Hsien Li-Ching)

- May 16-22, Shanghai, China, Fudan/SFI Biocomplexity Workshop
  "Shannon information and Self-Similarity in Whole Genomes"

- "Shannon information and Self-Similarity in Whole Genomes"
  German-Taiwan Symposium on Bioinformatics
  2004 April 5-6, Taipei

- "Shannon information in Complete Genomes" 
  NSF (China) Workshop on Theo. Phys. & Related Interdisciplinary Fields
  2004 Feb. 24-27, Beijing
  
- Workshop on Biosequence and Biomolecules
  Center for Cross-Disciplinary Research, AC
  2004 Feb. 27-29, I.Phys. Beijing 
======================================================================
2005

- Public Lecture. Friday November 25, 2005. The Autumn 2005 Outlook Series of public talks. Intitute of Mechanics, National Taiwan University. "Physics and Origins" (in Chinese)
[ National Science Council News 2005/11/26]

- November 15-18. Six lectures on computational genomics and molecular evoluition. Zhejiang University, Hangzhou, China.
- Colloquium, Zhejiang University, November 18. "Evolution of DNA by cellular automata"

- Friday, September 23. ROC Physical Society 2005 "Year of Physics" Public Lecture. Ma-Gong High School, Mu-Gong, Penghu.
"Physics and Origins"

- Saturday, September 17. ROC Physical Society 2005 "Year of Physics" Public Lecture. Fu-Dan High School, Chungli.
"Physics and Origins"

- Friday September 9. Center for Bioinformatic, Koeln University, Germany.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"

- Wednesday September 7. Center for Bioinformatic, Hamburg University, Germany.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"

- Wednesday July 20. Invited talk at "International Conference on Bio-Nano-Information Fusion", July 20-22, Marina del Rey, CA, USA.
"Information, Complexity, Universality, and Growth and Evolution of Genomes"

- Wednesday July 13. Seminar at "Santa Fe Institute 2005 Complex Systems Summer School", July 9- August 5, Beijing, China.
"Complexity, universality, self-similarity and the growth of complete genomes"

- Wednesday July 6, 2005. Invited talk at "Changchun International Bioinformatics Workshop", July 5-8, Jilin University, ChangChun, China.
"Complexity, universality, self-similarity and the growth of complete genomes"

- Monday, June 6. Invited talk at 2005 Annual Congress, Canadian Association of Physicists, June 5-8, University of British Columbia, Vancouver, Canada.
"Universality and growth of complete genomes"

- Tuesady, May 31. Invited talk at "Workshop on Astrobiology and the origins of life", May 30 - June 4, McMaster University, Hamilton, Canada.
"Universality and growth of complete genomes"

- Friday, April 15. Invited talk at "Workshop on Evolutionary Genetics and Systems Biology", Yang Ming U., Taipei.
"Systematics and some open problems in complete genomes"

- Thursday, February 3, 2005. Invited talk at Annual Congress, Physical Society of ROC, National Sun-Yatsan U., Kaohsiung.
"Complexity, Length Invariance, Universality, and Growth of Genomes"

- Friday, January 14, 2005. Seminar at Santa Fe Institute, Santa Fe, USA
"Complexity, Length Invariance, Universality, and Growth of Genomes"
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